FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102523460
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG2853418127.831855265126638No Hit
CCTACGTA2527763024.65545934559758No Hit
TGCTGAGT2496401124.349559603236177No Hit
ATAGTTAC2269609522.13746492753951No Hit
GAGCACCA1462300.14263076958190837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)