FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107170139
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3354066431.296650646314827No Hit
AGCTGGAT3085039228.786369307592295No Hit
CATGAACA2225821420.76904463098625No Hit
GTGACTTG1953017118.223519333123196No Hit
TCACTCGA1444660.13480060896440565RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1291350.12049531819679733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)