FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107137298
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3352751731.29397289821515No Hit
AGCTGGAT3076142928.71215680649329No Hit
CATGAACA2225774720.774975116508912No Hit
GTGACTTG1953368218.232382526578185No Hit
TCACTCGA1446550.13501833880484834RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1297810.1211352184745223No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)