FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96602017
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC2740414928.36809194159994No Hit
GGCTGTTG2539411926.287358989616127No Hit
TATGAGCT2156546522.324031805671304No Hit
ATACCCAA2108095721.822481201401832No Hit
ATACCAAA2017530.20884967650313138No Hit
GGCTGTTA1466550.15181360033093305No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)