FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36357498
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCTAC947046526.048175812317997No Hit
TCTAGCGA903143124.840628472289264No Hit
AGAGTGTG871745023.977034943383618No Hit
CTGTAACT863395623.747387677776945No Hit
GCTAGCGA547130.15048615281502592No Hit
AGAGTGTA513510.14123909186490227Illumina Single End PCR Primer 1 (100% over 8bp)
TCTATCGA373260.1026638301678515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)