FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36134018
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCTAC941077526.044086766105No Hit
TCTAGCGA897269124.831700144722348No Hit
AGAGTGTG865918523.964080053317073No Hit
CTGTAACT858668923.76344916859232No Hit
GCTAGCGA545680.15101558868986006No Hit
AGAGTGTA504790.13969938244897093Illumina Single End PCR Primer 1 (100% over 8bp)
TCTATCGA372480.10308291759859088No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)