FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32269391
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA1092930233.86894410247779No Hit
TATGGTGT721295422.352309034899356No Hit
ATCTTACC687361621.30073046621797No Hit
CGAACCTG679870821.068597173091987No Hit
GTGCAGAA562290.17424871761602195No Hit
GCGCAGCA383560.11886186510306315No Hit
ATCTTACA371570.11514626972662731No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)