FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31135461
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA834277426.79508744065167No Hit
AGGAGATG750545924.10582261813949No Hit
GATGTGGT743045923.86493972258834No Hit
CTACATCC730347723.45710249801665No Hit
CGGAGATG1184630.3804761394090166No Hit
CTACATCA682460.21919058786378656No Hit
TCCTCAAA583370.18736513970356822No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)