FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32187383
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT932478928.970323558146994No Hit
TTGTTTCC865250426.881663538784746No Hit
GGAGGAGG764499723.751533325961915No Hit
CCTAACAA612977019.04401485513749No Hit
AACCCGTA634770.197210813939114No Hit
TTGTTTCA521900.16214427870697037No Hit
CCCAACAA391220.121544519478331RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)