FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33053459
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC1000539530.270341751524406No Hit
AAGACGGA889548026.912402723115907No Hit
GTCCTTCT796507924.097565704091668No Hit
TCTTAAAG580508817.56272467580473No Hit
AAGACGAA371300.11233317517540296No Hit
GTCCTTCA336410.10177754769931946No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)