FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35940245
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC1265114435.200494598743No Hit
CTGACTGA846005323.539219056520068No Hit
ACCGTATG790878822.00538143243041No Hit
GATTAGAT613993817.08373996894011No Hit
GAGTAGAT1704360.4742204734553145No Hit
TGACGCCA864060.24041572337639877No Hit
CTGACTCA807290.22462006032513132No Hit
ACCGTATA529080.1472110165080956No Hit
CTGACTAA408750.11373044340682709No Hit
CTGACCGA392720.10927026234796118No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)