FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35940245
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA631200.1756248461856618No Hit
TGACTTTTACTTCCTCTAGATAGTCA531310.14783149085377686No Hit
GTAGGCCTTATTTCTCTTGTCCTTTC515010.14329618509834866No Hit
TGTTCCGTTGGTCAAGTTATTGGATC447970.12464300118154453No Hit
CAACCAAAGATCTGCTTATAAAATAA434140.120794947279853No Hit
TGTTCGTTATCGGAATTAACCAGACA432220.1202607272154099No Hit
GGATTACTCCGGTCTGAACTCAGATC428560.11924237021756529No Hit
ATCCACCTCAGTGTTGCTACATAGAC406890.11321291771939784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)