FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29522499
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC767773126.00637229253526No Hit
TCTCAGTG763678925.867691620550143No Hit
GAGACTAT700077223.713344862845112No Hit
ATAGGCCA688724923.32881440693757No Hit
TCTCAGTA330240.11186044921197219No Hit
ATACGCCA320760.1086493389329948No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)