FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29359704
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC763512726.00546313409699No Hit
TCTCAGTG759643325.873670252261398No Hit
GAGACTAT696377023.71880179718433No Hit
ATAGGCCA684448523.312513641145703No Hit
TCTCAGTA326190.11110125633419193No Hit
ATACGCCA315890.10759304657839874No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)