FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30267780
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCACGAA852286428.158206515311No Hit
CAATACCC766287225.31692776939703No Hit
TGTCTATG692389122.87545039642815No Hit
GTGGGTGT665588321.98999398039764No Hit
CAATACCA831680.27477403364237485No Hit
ACCACAAA473950.15658564982301312No Hit
TGTCTATA423770.14000696450152605No Hit
GGGGGTGT391370.1293025124406217No Hit
ACCACCAA316810.10466905732762694No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)