FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28556373
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT837603929.33159263608162No Hit
CTCGCGTA767357626.871675895254626No Hit
AAATGTGC612546021.45041318797734No Hit
TCTATCCG610271021.3707462078605No Hit
TCTATCCA372680.13050676988985963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)