FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26993974
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT784345429.056314568577417No Hit
CGGGCTTA712597526.39839172994684No Hit
TTCATCGG609345022.573371375404005No Hit
AAACAAAC549424020.353579654481404No Hit
AAACAAAA568570.21062849064017028No Hit
CGGGCTAA448950.16631489679881886No Hit
TTCATCGA368530.13652306251758262No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)