FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31549883
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGAGAA844234026.758704620235836No Hit
TCGTCACG816279825.872672808327057No Hit
GTAATTGC661028020.951836810298154No Hit
AGTCGCTT576618918.276419598766815No Hit
AGTCGCGT22238327.048622018661686No Hit
TCGTCACA774610.2455191355226262No Hit
AGTCGCTA427160.13539194424270926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)