FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31315813
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC887851828.35154878463478No Hit
CCTGAAGG810981125.89685600689977No Hit
AAGATCAT803395725.654633331729244No Hit
TGATCTCA595420919.01342622016551No Hit
CCTGAAGA396600.12664528300766134No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)