FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30046392
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGGAT809500326.9416807182706No Hit
AGGTACGC802211426.699092523321934No Hit
GTTCCTCA735965624.49430866774287ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG618002620.568279878662306No Hit
TAAGTATA635860.211626074771307No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)