FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30046392
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACC362530.12065674973554229No Hit
CCTCTATATAAATGCGTAGGGGTTTT351840.11709891823284474No Hit
GAACGGACATCCCATCTTGGGGCTTT335850.11177714781861328No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT328530.10934091520872122No Hit
ACTATCTAGACAGACCACGGTGACGA317770.10575978639964492No Hit
GCGCGATGTCGCGAAACCCTATGGCC315070.1048611760107503No Hit
CGATGGCCATGACGGACCAAAGAGTG311970.10382943815683426No Hit
AGCATACAGCGACGTAAAGACATGGC311810.1037761871708257No Hit
AGATTGCTCTGGTGTACATGGCTCTT311110.1035432141070382No Hit
AGTGTCAGTCGCTTCTGTATGTGCTG308290.10260466547863717No Hit
CTCGAAACATACGCCGGGGAACCTAA304810.10144645653295077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)