FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38548331
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1439395337.34001609563848No Hit
GAGGATCT1019768926.454294480349876No Hit
CTTATGAG653183716.944539051509132No Hit
AGACCATA601286515.598249895695874No Hit
CTTAGGAG8578212.2253129454554075No Hit
CTTCTGAG978370.2538034655767587No Hit
TCCTGCGA509900.13227550629883303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)