FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38310223
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1431531837.36683547887466No Hit
GAGGATCT1012095426.41841578421509No Hit
CTTATGAG650387916.976875858958067No Hit
AGACCATA597445515.594936630883094No Hit
CTTAGGAG8528572.226186467251835No Hit
CTTCTGAG847150.22112896602037527No Hit
TCCTGCGA503500.13142706060468506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)