FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33375504
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC912698627.346361571049233No Hit
GCAGTTCT861669225.817413873360533No Hit
CTTTGCGG814502824.404209746165932No Hit
TGCACAAA706047021.154646833198385No Hit
GCAGTTCA598550.17933811576298594No Hit
CTTTGCGA544220.16305970989981156No Hit
AAGCAGTA390460.11698999361927238No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)