FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34577562
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG1095667931.68725140309198No Hit
TCCAATGC830467824.01753483950083No Hit
GTAGCACA796535223.03618745589987No Hit
CGTTTGAT687979519.89670353277076No Hit
GGAGCACA657010.19001050449999915No Hit
AAGCGCTA481940.13937940448201638No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)