FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33276728
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC913326927.446415404783785No Hit
GCGGATAG811899924.398429436932624No Hit
CATCTCCA773465423.243433068299264No Hit
TTATCGTT765287722.99768474833223No Hit
CAGCTCCA859150.2581834367850108No Hit
GCGGCTAG662560.1991061140386158No Hit
CATCTCAA543900.16344756010867414No Hit
CAACTCCA509330.15305891853309617No Hit
CACCTCCA452700.13604101941753408No Hit
AATCTCCA402540.12096742203740703No Hit
TTATCGTA388490.11674525211733558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)