FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33830206
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1024145230.2730997263215No Hit
GGCGAGTA949299128.060695226035577No Hit
CAAATACG707579820.91562197404296No Hit
ACTTCTAT620939618.3545911603376No Hit
TCTTCTAT1830780.5411672633622154No Hit
CCTTCTAT1317360.3894034816104874No Hit
GCTTCTAT1021020.30180720744059314No Hit
CAAATACA542080.16023550078293936No Hit
GTGCGCGC442000.13065247075350353No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)