FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33622519
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1018070430.279420765588682No Hit
GGCGAGTA943294728.055444031424297No Hit
CAAATACG702320020.888381385106808No Hit
ACTTCTAT615456618.304892622709204No Hit
TCTTCTAT1830410.5444000195226301No Hit
CCTTCTAT1391750.4139338875829024No Hit
GCTTCTAT1108030.3295499661997366No Hit
CAAATACA546860.16264694504299335No Hit
GTGCGCGC460200.136872552588936No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)