FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40861088
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1115097827.289968392422637No Hit
CAGATGGG1033446225.291695610258834No Hit
AGTGGAAC969857323.735474199805935No Hit
TCACATCA917247122.44793628598436Illumina PCR Primer Index 1 (100% over 8bp)
CAGATGGA1082850.2650076277949329No Hit
GTCTCCTA697800.1707737199753467No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)