FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40616002
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1109488627.316538934580514No Hit
CAGATGGG1026824625.281281993240007No Hit
AGTGGAAC963480423.72169471529965No Hit
TCACATCA911306322.43712465840434Illumina PCR Primer Index 1 (100% over 8bp)
CAGATGGA1079140.2656933097452575No Hit
GTCTCCTA695940.1713462590434184No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)