FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31760684
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTAG930086029.28419299785861No Hit
ACCGGCTC906477128.540855732200228No Hit
GAGTTAGT758081223.86854137020475No Hit
TTAAAGCA549498017.301201699560377No Hit
CGTCCTAA384040.12091679133862483No Hit
ACCGGCTA361700.11388293778559681No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)