FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36665846
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC1067828129.12323637643599No Hit
TGATGCAT967058526.374913045781078No Hit
GCTACTGA812474922.1589023201592No Hit
ATGGAATG777391521.202060904308603No Hit
CACCTGCA715600.19516800457842975No Hit
GCTACTAA392260.10698239446050148No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)