FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36082518
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC1043142028.909900356732308No Hit
TGGAGGCT949848026.324326921973686No Hit
CCCGATTA917831225.437005255564483No Hit
ATTCTAAG659477018.276911827494967No Hit
CCCGATAA430810.11939576944158942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)