FastQCFastQC Report
Mon 22 May 2023
EGAF00008003355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199055571
Sequences flagged as poor quality0
Sequence length114
%GC33

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTTATGCCACGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18111970.9098951568655167No Hit
TACGCCTATAACTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18045750.9065684476622862No Hit
TACGCCTATAACTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17841150.8962899109214081No Hit
ACCTTTATGCCACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14964700.7517850379580685No Hit
TACGCCTATAACTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11936770.5996702297771912No Hit
ACCTTTATGCCACGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11191080.5622088316232053No Hit
TTCTTTGCCTTGCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11070750.5561637860414366No Hit
TTCTTTGCCTTGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9122510.45828960999036794No Hit
CTACGACGTAGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7827650.3932394336252965No Hit
TTCTTTGCCTTGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6984010.350857299040377No Hit
CTACGACGTAGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6971030.3502052198277837No Hit
CATTAGAGTCTGCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6032910.30307667199126015No Hit
CATTAGAGTCTGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5372190.2698839310556146No Hit
TGTACCCGCTTGTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5146340.25853785323094525No Hit
GACAAGTGATCTGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4846070.2434531209377707No Hit
GCGCTACTTCCTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4771110.23968733836643033No Hit
TTCTTTGCCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4369850.21952914847080568No Hit
CATTAGAGTCTGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4057110.20381795795104876No Hit
CTACGACGTAGAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3764680.1891270855212588No Hit
GACAAGTGATCTGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3535540.17761572721820482No Hit
TGTACCCGCTTGTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3386340.17012033287930434No Hit
GACAAGTGATCTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3200410.1607797251753381No Hit
GCGCTACTTCCTTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3164070.1589541043289866No Hit
CGTGTTTAACTTGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3142830.1578870656174702No Hit
GCGCTACTTCCTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2863610.14385982696259225No Hit
CGTGTTTAACTTGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2856280.14349158808521867No Hit
TACGCCTATAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2817890.14156298092254851No Hit
CATTAACAGCGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2727410.1370175165808346No Hit
CCGTGTTCCTCATTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2721670.1367291548951423No Hit
GTCTTTGTCAGTGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2692690.13527328004298858No Hit
ACCTTTATGCCACGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC2599840.1306087534721648No Hit
GTATTCCCTCAGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2568540.12903632825227485No Hit
GTATTCCCTCAGTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2382560.11969320868693498No Hit
TAACTCAGGGCCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2334340.1172707695782099No Hit
TGTACCCGCTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2182700.10965279640427648No Hit
GTATTCCCTCAGTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2152910.10815622939787No Hit
TAACTCAGGGCCTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2138000.10740719233625468No Hit
CGTGTTTAACTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2116780.10634115836928774No Hit
ACCTTTATGCCACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC2039320.1024497827292661No Hit
CCGTGTTCCTCATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2017250.1013410471189475No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)