FastQCFastQC Report
Mon 22 May 2023
EGAF00008003371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences243500329
Sequences flagged as poor quality0
Sequence length114
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACGACGTAGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA16257370.6676528966825339No Hit
CTACGACGTAGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13314410.546792279693388No Hit
CATTAACGGGATGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12379490.5083972597014438No Hit
CATTAACGGGATGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12239680.5026555836809568No Hit
GCACTCCTGCATGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9908610.40692388551146474No Hit
TGGATTCCCGGACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9203360.37796088562985064No Hit
GCACTCCTGCATGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8731810.358595408715033No Hit
TGGATTCCCGGACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8381770.34422006879506106No Hit
CATTAACGGGATGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6915460.2840020803421584No Hit
TGGATTCCCGGACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6589600.27061975756098466No Hit
CTCATTGTAACTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6455580.26511586356008576No Hit
CTCATTGTAACTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6389620.2624070376512715No Hit
CTACGACGTAGAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6210210.25503908046054424No Hit
CTCATTGTAACTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5488220.22538860717514678No Hit
GCACTCCTGCATGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5390080.22135822247698073No Hit
CTACGACGTAGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG3662550.15041252777937725No Hit
TGTTCCCGCTCAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3577320.14691232716979202No Hit
CATTAACGGGATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3507150.14403060621737393No Hit
TGAGAACGACCCTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3247110.1333513598661298No Hit
TTCCGAGGATGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3178410.1305300084420009No Hit
TCATATCCGTTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3099700.12729756927761687No Hit
TGTTCCCGCTCAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3022590.12413083844334354No Hit
CTACGACGTAGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG2864530.11763967678253118No Hit
TGAGAACGACCCTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2732600.11222161428783943No Hit
TGTTCCCGCTCAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2698030.11080190368038476No Hit
TGTACCCGCTTGTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2604770.10697192938905638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)