FastQCFastQC Report
Mon 22 May 2023
EGAF00008003385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200366689
Sequences flagged as poor quality0
Sequence length202
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACT11124100.5551870949966139No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA10322130.5151619788456953No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT10077140.5029348965286341No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA9885010.4933459772846773No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG8262640.4123759314104352No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA7570280.3778212854532921No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC7225100.360593870970239No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG6892330.3439858209165696No Hit
CATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCC6636250.331205253384209No Hit
GAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAAC6636230.33120425521429864No Hit
CCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCAC6308400.3148427531284903No Hit
CCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAAC5858000.29236396674698756No Hit
GTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACAT5674610.2832112477538619No Hit
CACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTA4949650.24702958484281787No Hit
CCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTA4855710.24234118077381614No Hit
GGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTG4482940.22373679089940945No Hit
GATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC4395600.2193777829008294No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4376640.21843151782579986No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC4303100.21476124706537422No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC4299450.21457908105673193No Hit
CATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAG4124120.20582862453748488No Hit
GTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAAT4031880.2012250649108645No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC3998510.19955961841541434No Hit
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC3934580.19636896829692083No Hit
CCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATA3872510.19327114798009165No Hit
CTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTA3871310.19321125778546952No Hit
GATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTG3650410.1821864711254474No Hit
CTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATA3608790.18010927954197017No Hit
CCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCAC3570140.1781803161901827No Hit
ATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAA3527170.17603574813775558No Hit
CCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAAT3508570.1751074501211127No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA3475480.1734559780044077No Hit
GCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGG3385110.1689457472644068No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3381920.168786539163703No Hit
CAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTA3343410.1668645630012881No Hit
CAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAA3309920.16519312748637574No Hit
ATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCA3272260.16331357354515152No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC3246930.16204939135366958No Hit
GCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCAT3219970.16070385831449258No Hit
CAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCG3218790.16064496628978084No Hit
CCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCT3211680.16029011688664477No Hit
CCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTC3146240.15702410493991845No Hit
ATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGT3113800.15540507334530043No Hit
CATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAG3102310.15483162473179363No Hit
GGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCA3047120.15207717486413122No Hit
GGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTC3009550.15020211268750366No Hit
ACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACC3006040.15002693386823396No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC2994010.1494265346671472No Hit
CCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCA2971900.1483230578312346No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAA2947840.14712225942906107No Hit
GTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTC2918950.14568040299353352No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG2882170.14384476852836553No Hit
GCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATT2861020.14278920384815064No Hit
CCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAA2842410.14186040674655256No Hit
TCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATC2832150.14134834558253345No Hit
GACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGC2806640.1400751798618582No Hit
CCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTT2779680.13872964682268119No Hit
CACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCT2703320.13491863410489355No Hit
TCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTC2661240.13281848461347784No Hit
CCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAAC2618210.1306709220513196No Hit
CGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACC2607010.13011194690151315No Hit
GTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCA2592780.12940174901028584No Hit
TTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTA2582500.12888868967635633No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTC2575140.12852136314934065No Hit
TCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATA2569750.1282523563584963No Hit
GCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATC2544650.1269996531209836No Hit
CTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT2543610.12694774828564442No Hit
CCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTC2539670.12675110881330182No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC2536000.12656794463474913No Hit
GCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCA2528760.12620660712719567No Hit
CTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTT2517840.12566160635613438No Hit
GTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATG2514290.12548443119704392No Hit
CATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCG2443360.12194442160992139No Hit
ATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTA2415130.12053550478143601No Hit
CGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACC2401270.11984377303355051No Hit
CTCTAAATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGC2392900.11942603892606121No Hit
AGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCG2371270.11834651816799747No Hit
CTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCT2355350.11755197491934401No Hit
GCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACT2336780.11662517415756668No Hit
ATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGA2336080.11659023821070377No Hit
CCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGA2322430.11590898724687716No Hit
CAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTC2316060.11559107013042473No Hit
GGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGC2310100.11529361549713485No Hit
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT2309290.11525318961576492No Hit
GCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGT2286580.11411976768254128No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG2271760.11338012377895808No Hit
GCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCAACACCCACTA2260910.11283861660258308No Hit
CCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGC2231510.11137130683434111No Hit
CCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTA2221100.1108517593959942No Hit
CACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTC2220670.11083029874292129No Hit
CTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACAT2215380.11056628280162875No Hit
GTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAAT2188160.10920777355361698No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC2146020.10710462955247017No Hit
GTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACAAGCAT2140210.10681466119350806No Hit
ATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGG2139190.10676375452807928No Hit
CTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGG2138950.10675177648915483No Hit
CAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACA2134130.10651121754075597No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCA2108250.10521958567673892No Hit
TCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCAT2107310.1051726716909516No Hit
CCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTA2091460.10438162203698441No Hit
CACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCT2086210.10411960243551263No Hit
GGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATT2084380.10402826988871389No Hit
GTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCA2076250.10362251382014902No Hit
GTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCT2071400.10338045761688461No Hit
CCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAG2059140.1027685794618286No Hit
CATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGT2054820.10255297476118898No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACA2053630.10249358365152204No Hit
CTCCAGCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAG2052610.10244267698609323No Hit
TCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACA2046250.10212525895459598No Hit
GCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCA2019690.10079968931362639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)