FastQCFastQC Report
Wed 31 May 2023
EGAF00008003411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences227813180
Sequences flagged as poor quality0
Sequence length202
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17907500.7860607538159118No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14546910.6385455837103016No Hit
CCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACT8278750.36340083571986487No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT7210370.31650363688352007No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTCATTACA7102520.31176949463591175No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA6652280.2920059322292064No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC5994320.2631243723475525No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC5783330.2538628362064039No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA5468790.24005590896891918No Hit
CATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCC4711150.20679883402707427No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG4704160.2064920036672154No Hit
GAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAAC4460960.1958165897161876No Hit
GTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACAT4265560.18723938623744243No Hit
CCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCAC4066470.17850020793353572No Hit
CCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAAC4019980.1764595007189663No Hit
CCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTCA3918800.17201814223391287No Hit
CACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTA3864030.16961397931410288No Hit
TCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACA3643030.159913048051039No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA3611210.1585162895316241No Hit
TTCAAGCACTGCTCATTACAATTTTACTGGGTCTCTATTTTACCCTCCTA3531130.15500112855630213No Hit
GATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC3214120.14108577914587736No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC3057520.13421172559024022No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC3056720.13417660909698026No Hit
CTCTAAATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGC3024690.13277063249808463No Hit
CCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAAT2941600.12912334571687203No Hit
GGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTG2886530.12670601411208957No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC2839020.12462053336861371No Hit
CTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTA2797050.12277823434096305No Hit
GTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAAT2757880.1210588430397223No Hit
GTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACAAGCAT2710150.11896370526059993No Hit
GCTCATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG2663720.11692563178302502No Hit
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC2656010.11658719657923215No Hit
CATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCACCACCCTAG2487980.10921141612614337No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG2427220.10654431846304942No Hit
ACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACC2411460.1058525235458282No Hit
CCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTT2410970.10583101469370648No Hit
GGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTC2390620.10493773889640626No Hit
TCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATA2379400.10444523007843531No Hit
CCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTC2355630.10340183127244876No Hit
CAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACA2341930.10280046132537196No Hit
GCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCAT2334940.10249363096551305No Hit
CCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCA2333780.10244271205028613No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC2324900.10205291897510055No Hit
CAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTA2315030.10161966923950581No Hit
GTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCT2311610.1014695462308195No Hit
GCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATT2309880.10139360681414482No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC2308990.10135453971539311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)