FastQCFastQC Report
Wed 31 May 2023
EGAF00008003421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences242400441
Sequences flagged as poor quality0
Sequence length202
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACT11690920.4822978024202522No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8468840.34937395184029385No Hit
CATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCC7277070.3002086122442327No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA7225590.29808485373176363No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT7201780.2971025947927215No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA6594890.27206592417049275No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC6393670.26376478415730276No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6235530.2572408686335682No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG6186380.25521323205843505No Hit
CCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAAC5753220.23734362760503394No Hit
CACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTA5546060.2287974385327129No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA5336530.2201534773610416No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC5146840.21232799654848813No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA4840580.19969353108561383No Hit
GATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC4694790.19367910308380998No Hit
CCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAAT4435930.18300007960794096No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG4346250.17930041637176725No Hit
GAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAAC4289560.17696172425692908No Hit
CCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTA4176140.17228268986523831No Hit
GTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACAT4096680.1690046430237311No Hit
CCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCAC4070100.16790811036519526No Hit
CATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAG3957980.16328270623897093No Hit
CTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTA3943010.16266513310510025No Hit
CCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAA3920510.16173691697202813No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC3548430.14638710991454013No Hit
ACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACC3424600.1412786208586147No Hit
CAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTA3324210.1371371267430986No Hit
CTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCAC3266230.13474521690329763No Hit
CTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATA3253170.1342064390056122No Hit
CCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCA3247860.13398737999820717No Hit
TCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATC3234490.13343581334491053No Hit
GCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCAT3233330.13338795864649436No Hit
CCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATA3218230.13276502248607708No Hit
TCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATA3183890.1313483583967572No Hit
GGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTG3169920.1307720393132453No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC3118580.1286540563678265No Hit
GCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATT3095500.12770191288554628No Hit
CTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCAC3058470.12617427540076134No Hit
CAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAA3028770.12494903010510612No Hit
ATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAA3012330.12427081351720809No Hit
CATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAG2918010.12037973148736969No Hit
CTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGC2914780.12024648090471089No Hit
GTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCT2911460.12010951745751981No Hit
TCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACA2867900.11831249102389216No Hit
CTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCT2863180.11811777190619879No Hit
CCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCT2860000.11798658402605794No Hit
CCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCAC2855210.11778897712483946No Hit
GCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGT2826370.11659921031249279No Hit
GTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAAT2790040.11510045066295899No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC2788400.11503279402037062No Hit
CCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTA2764190.114034033461185No Hit
ATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTA2751240.11349979350903903No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC2699340.1113587082954193No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG2671280.11020111964235248No Hit
ATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCA2636760.10877702982396802No Hit
CCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTT2615090.10788305455269366No Hit
CCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAAC2583600.10658396450689625No Hit
CCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTC2539290.10475599753549954No Hit
CTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGAC2497070.10301425152935262No Hit
GGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGA2476720.10217473160455183No Hit
CTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGG2471850.10197382437930466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)