FastQCFastQC Report
Mon 22 May 2023
EGAF00008003423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38094360
Sequences flagged as poor quality0
Sequence length130
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTGTAAG525548413.795963496958604No Hit
TTGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTGTAA481670412.644139447414263No Hit
GCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTGTAAGT471802312.385095851459377No Hit
CATGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTGTA452580311.880506720679913No Hit
AGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTATAAG396247810.40174451021096No Hit
TTGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTATAA36298019.528447255709244No Hit
GCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTATAAGT35632119.353644476505183No Hit
CATGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTATA34120278.956777328717427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1000630.26267142957645173No Hit
TGCTTGCCGCATCCCAAAACGATTTAAGGTGACTCACATCGAGGTGTAAG406140.10661420745748189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)