FastQCFastQC Report
Wed 31 May 2023
EGAF00008003425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6148578
Sequences flagged as poor quality0
Sequence length130
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAG94042715.295032444900267No Hit
CCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGT91424914.869275464993695No Hit
CATCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGA88100714.328630132040288No Hit
TTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAA75717412.314619738092288No Hit
ACCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGTCTGGCAGTGGAG5628859.154718375533335No Hit
CCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGTCTGGCAGTGGAGG5516928.972676283849697No Hit
CATCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGTCTGGCAGTGG5308968.63445173827184No Hit
TTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGTCTGGCAGTGGA4568327.429880534978982No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG185310.3013867596702847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)