FastQCFastQC Report
Mon 22 May 2023
EGAF00008003455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008003455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4703271
Sequences flagged as poor quality0
Sequence length130
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGAGAGAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTG64201213.650329738601071No Hit
CGGGAGAGAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGG56458912.004177518157045No Hit
CATCGGGAGAGAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGT51164710.878535385266977No Hit
TTCGGGAGAGAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTT47255510.047369160739409No Hit
ATCCAGCTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAGA4668749.92658088381469No Hit
TCCAGCTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAGAG3434667.302704862211852No Hit
TTTCCAGCTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAG2069704.400554422656062No Hit
AGGCTGTCAAGTGTGCCACCATCACCCCTGATGAGGCCCGTGTGGAAGAG1917854.077694013379199No Hit
CATTCCAGCTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATA1881664.000747564833071No Hit
TTGGCTGTCAAGTGTGCCACCATCACCCCTGATGAGGCCCGTGTGGAAGA1705613.6264336033369116No Hit
GGCTGTCAAGTGTGCCACCATCACCCCTGATGAGGCCCGTGTGGAAGAGT1379542.933150141677994No Hit
CATGGCTGTCAAGTGTGCCACCATCACCCCTGATGAGGCCCGTGTGGAAG1191362.533045618676874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG120530.2562684565699064No Hit
ACGGGAGAGAGGCCTGCTGAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGC55760.1185557880887578No Hit
TCGGGAGAGAGGCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTG47400.10078092459481923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)