FastQCFastQC Report
Sun 21 May 2023
EGAF00008004289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008004289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3767
Sequences flagged as poor quality0
Sequence length75
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGTGTATAAGAGACAGGCGATTGGCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGC230.6105654366870188No Hit
GAGATGTGTATAAGAGACAGGCGATTGGCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATGTCGTATGC110.29200955667640033No Hit
CGTCAGATGTGTATAAGAGACAGCCGAAAAGGTGGGAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCG90.2389169100079639No Hit
CGGAGATGTGTATAAGAGACAGGCGATTGGCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATGTCGTAT80.2123705866737457No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA70.18582426333952748No Hit
CGGAGATGTGTATAAGAGACAGGCGATTGGCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTAT60.15927794000530926No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGC60.15927794000530926No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCC50.13273161667109104No Hit
GGAGATGTGTATAAGAGACAGGCGATTGGCTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATG50.13273161667109104No Hit
CCGAAAAGGTGGGAGCCTGTCTCTTATACACATCTCCGAGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGA50.13273161667109104No Hit
GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGACACTCAGCTAAGAGC50.13273161667109104No Hit
GGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAG40.10618529333687285No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG40.10618529333687285No Hit
GGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAA40.10618529333687285No Hit
CCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGT40.10618529333687285No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGC40.10618529333687285No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG40.10618529333687285No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT40.10618529333687285No Hit
GAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCG40.10618529333687285No Hit
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGG40.10618529333687285No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAG40.10618529333687285No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCC40.10618529333687285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)