FastQCFastQC Report
Sun 21 May 2023
EGAF00008004808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008004808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9071
Sequences flagged as poor quality0
Sequence length75
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCGGGGT280.3086760004409657No Hit
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAAGCGGGGT200.22048285745783266No Hit
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATGGGGGT200.22048285745783266No Hit
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCGCGGT190.20945871458494103No Hit
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCGGGGG150.1653621430933745No Hit
AGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACT140.15433800022048286No Hit
GTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCGCGTT110.12126557160180797No Hit
GATGTGTATAAGAGACAGGGCATTGCCCCTGACTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATGGG100.11024142872891633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)