FastQCFastQC Report
Wed 31 May 2023
EGAF00008004964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008004964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504377
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACT13800.27360486302904374No Hit
TCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCC7270.14413821407399624No Hit
ATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGG6640.1316475572835399No Hit
TGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAATTCCCTACTGAAGACT6320.12530309669156206No Hit
GCGTTAACATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTT5740.11380376186860225No Hit
ATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCTGCCGAAG5660.1122176467206078No Hit
CCCCTTGTCCGTACCAGTTCTGAGCTGGCTGTTCGACGCCCGGGGAAGGCTCCCGAAGGAGCCGTTCCCAGTCCG5270.10448533537413482No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTTAACATCCGCAGGGACCATCGCAATGCTTTGTTTTA5140.10190789825864383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)