FastQCFastQC Report
Sun 21 May 2023
EGAF00008005943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008005943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348308
Sequences flagged as poor quality0
Sequence length75
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGGTCCGTGCCAGTTCTGAGCTGACCGTTAAATGACGGTCGAAGAGAACACCCGGGCGTCCTTGCGAACGT8510.2443239891130838No Hit
CCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTTACCCGGGCCGCTCGGCCAGGGAGGACACGCTGATTCCTTC6550.18805195401770847No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA4390.12603787452484583No Hit
GTTCTGAGCTGACCGTTAAATGACGGTCGAAGAGAACACCCGGGCGTCCTTGCGAACGTATCCGGGGTCTCGCAG4150.1191474212478611No Hit
GTATCAACGCAGAGTACATGGGCAGAAATCACATTGCGTCAACACCCGCTGGGGCCATCGCAATGCTTTGTTTTA4130.11857321680811235No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATG4100.11771191014848927No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG4020.11541509238949435No Hit
GTCCCGTCCTTGGCCTCCCGCGGAACCGTTTAGCTGCGAGACCCCGGATACGTTCGCAAGGACGCCCGGGTGTTC4010.11512799016962No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGACACTCAGCTAAGAGCATCGAGGGGG3970.11397958129012253No Hit
GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGT3930.11283117241062508No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTG3890.11168276353112762No Hit
GAATAATGTAGGTAAGGGAAGTCGGCAAATTGGATCCGTAACTTCGGGATAAGGATTGGCTCTGAGGATCGGGGC3800.10909884355225835No Hit
CCCTAGCACGAAGGAGGTTCAGCGGGTTACCCGGGCCGCTCGGCCAGGGAGGACACGCTGATTCCTTCAGTGTAA3790.10881174133238397No Hit
GACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGGCCCCAGCGGGTGTTGACGCAATGTGATTT3720.10680202579326342No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACC3620.10393100359451979No Hit
GTCTAGCACCGGCGACGCATCTTTCAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGGT3580.10278259471502232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)