FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101984268
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT1600080.1568947869489047No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT1197430.11741320729977686No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1159250.11366949263194202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)