FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118246444
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT5346240.45212691554597617No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC2639290.2232024837888571No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACAATGATCTCGTATG2277070.19256985013435163TruSeq Adapter, Index 23 (97% over 37bp)
GTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTC2017300.17060132480601278No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT1940880.16413855117706544No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1870390.15817727254444963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)