FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103741818
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1236600.11919976185495419No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1174810.11324362948796599No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1105900.1066011779357867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)