FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88886097
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1949890.2193695151222581No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG1404680.15803146357073142No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1357330.1527044212549911No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCA1115240.12546844080689018No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1113120.12522993331566803No Hit
CCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCGC1021180.11488635843691056No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCTATCATCTCGTATG996010.11205464449631532TruSeq Adapter, Index 9 (97% over 37bp)
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT974140.10959419221658478No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGAC946340.10646659398263374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)