FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85553539
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT2164240.2529690793971714No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1213840.14188074674502943No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1092490.12769664619017104No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC951000.11115846417528094No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT920250.10756422361440829No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATG910550.10643043065699478TruSeq Adapter, Index 5 (97% over 37bp)
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC872360.10196655920919882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)